{ "_id": "6ac8c955de46216d5edd7345", "Package": "phsmethods", "Title": "Standard Methods for Use in Public Health Scotland", "Version": "1.2.0.9000", "Authors@R": "c(\nperson(\"Public Health Scotland\", , , \"phs.datascience@phs.scot\", role = \"cph\"),\nperson(\"David\", \"Caldwell\", , \"David.Caldwell@phs.scot\", role = \"aut\"),\nperson(\"Lucinda\", \"Lawrie\", , \"Lucinda.Lawrie@phs.scot\", role = \"rev\"),\nperson(\"Jack\", \"Hannah\", , \"jack.hannah2@phs.scot\", role = \"aut\"),\nperson(\"Tina\", \"Fu\", , \"Yuyan.Fu2@phs.scot\", role = c(\"aut\", \"cre\")),\nperson(\"Ciara\", \"Gribben\", , \"Ciara.Gribben@phs.scot\", role = \"aut\"),\nperson(\"Chris\", \"Deans\", , \"Chris.Deans2@phs.scot\", role = \"aut\"),\nperson(\"Jaime\", \"Villacampa\", , \"Jaime.Villacampa@phs.scot\", role = \"aut\"),\nperson(\"Graeme\", \"Gowans\", , \"Graeme.Gowans@phs.scot\", role = \"aut\"),\nperson(\"Alice\", \"Byers\", role = \"ctb\"),\nperson(\"Alan\", \"Yeung\", , \"Alan.Yeung@phs.scot\", role = \"ctb\"),\nperson(\"James\", \"Hayes\", , \"James.Hayes2@phs.scot\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-5380-2029\")),\nperson(\"Nicolaos\", \"Christofidis\", , \"nicolaos.christofidis@phs.scot\", role = \"aut\")\n)", "Description": "A collection of methods for commonly undertaken analytical\ntasks, primarily developed for Public Health Scotland (PHS)\nanalysts, but the package is also generally useful to others\nworking in the healthcare space, particularly since it has\nfunctions for working with Community Health Index (CHI)\nnumbers. The package can help to make data manipulation and\nanalysis more efficient and reproducible.", "License": "GPL (>= 2)", "URL": "https://github.com/Public-Health-Scotland/phsmethods,\nhttps://code.publichealthscotland.scot/phsmethods", "BugReports": "https://github.com/Public-Health-Scotland/phsmethods/issues", "VignetteBuilder": "knitr", "RdMacros": "lifecycle", "Config/roxygen2/markdown": "TRUE", "Config/roxygen2/version": "8.1.0", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-GB", "LazyData": "true", "Config/pak/sysreqs": "libicu-dev libx11-dev", "Repository": "https://public-health-scotland.r-universe.dev", "Date/Publication": "2026-08-27 08:40:47 UTC", "RemoteUrl": "https://github.com/public-health-scotland/phsmethods", "RemoteRef": "HEAD", "RemoteSha": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-09 10:18:52 UTC", "User": "root" }, "Author": "Public Health Scotland [cph],\nDavid Caldwell [aut],\nLucinda Lawrie [rev],\nJack Hannah [aut],\nTina Fu [aut, cre],\nCiara Gribben [aut],\nChris Deans [aut],\nJaime Villacampa [aut],\nGraeme Gowans [aut],\nAlice Byers [ctb],\nAlan Yeung [ctb],\nJames Hayes [aut] (ORCID: ),\nNicolaos Christofidis [aut]", "Maintainer": "Tina Fu ", "_user": "public-health-scotland", "_type": "src", "_file": "phsmethods_1.2.0.9000.tar.gz", "_fileid": "https://r2.ropensci.org/e28a426e04211134fb0fde18bdb1824c5adae751fbac7df7fe3f9009b2352d36", "_filesize": 463844, "_sha256": "e28a426e04211134fb0fde18bdb1824c5adae751fbac7df7fe3f9009b2352d36", "_expires": "2027-01-17T11:00:35.000Z", "_created": "2026-10-09T10:18:52.000Z", "_published": "2026-10-09T11:00:37.799Z", "_buildurl": "https://github.com/r-universe/public-health-scotland/actions/runs/37916461706", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113775070397, "time": 144, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11610990117" }, { "job": 113775070463, "time": 140, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11610445360" }, { "job": 113775070484, "time": 104, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11611961994" }, { "job": 113775070404, "time": 136, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11611830967" }, { "job": 113773894332, "time": 205, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11610350018" }, { "job": 113775070429, "time": 113, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11610335375" }, { "job": 113775070658, "time": 102, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11609529966" }, { "job": 113775070772, "time": 87, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11609924841" }, { "job": 113775070519, "time": 77, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11609869677" } ], "_upstream": "https://github.com/public-health-scotland/phsmethods", "_commit": { "id": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "author": "James Hayes (né McMahon) ", "committer": "GitHub ", "message": "Merge pull request #190 from Public-Health-Scotland/phs-domain-update\n\nPHS domain update", "time": 1787820047 }, "_maintainer": { "name": "Tina Fu", "email": "yuyan.fu2@phs.scot", "login": "tina815", "description": "", "uuid": 31853064 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6", "role": "Depends" }, { "package": "cli", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "scales", "version": ">= 1.0.0", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "flextable", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "public-health-scotland", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-43", "n": 1 }, { "week": "2025-44", "n": 1 }, { "week": "2025-45", "n": 7 }, { "week": "2025-48", "n": 3 }, { "week": "2026-06", "n": 1 }, { "week": "2026-07", "n": 3 }, { "week": "2026-15", "n": 1 }, { "week": "2026-19", "n": 1 }, { "week": "2026-28", "n": 1 }, { "week": "2026-29", "n": 3 }, { "week": "2026-31", "n": 4 }, { "week": "2026-32", "n": 2 }, { "week": "2026-33", "n": 1 }, { "week": "2026-35", "n": 1 } ], "_tags": [ { "name": "1.1.0", "date": "2026-04-07" }, { "name": "1.2.0", "date": "2026-08-05" } ], "_stars": 59, "_contributors": [ { "user": "moohan", "count": 279, "uuid": 5982260 }, { "user": "jackhannah95", "count": 208, "uuid": 38332502 }, { "user": "tina815", "count": 137, "uuid": 31853064 }, { "user": "nic-chr", "count": 48, "uuid": 74770457 }, { "user": "jvillacampa", "count": 40, "uuid": 30340183 }, { "user": "alan-y", "count": 26, "uuid": 34042624 }, { "user": "davidc92", "count": 18, "uuid": 33342336 }, { "user": "jokpro", "count": 17, "uuid": 57229241 }, { "user": "chrisdeans", "count": 15, "uuid": 23474011 }, { "user": "graemegowans", "count": 7, "uuid": 47667899 }, { "user": "rmccreath", "count": 3, "uuid": 33964310 }, { "user": "ciarag01", "count": 1, "uuid": 36995878 }, { "user": "alice-hannah", "count": 1, "uuid": 36480969 } ], "_userbio": { "uuid": 35955342, "type": "organization", "name": "Public Health Scotland", "followers": 234 }, "_downloads": { "count": 389, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phsmethods" }, "_devurl": "https://github.com/public-health-scotland/phsmethods", "_pkgdown": "https://code.publichealthscotland.scot/phsmethods", "_searchresults": 146, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/phsmethods.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/public-health-scotland/phsmethods", "_realowner": "public-health-scotland", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2023-11-03" }, { "version": "1.0.1", "date": "2023-11-28" }, { "version": "1.0.2", "date": "2024-01-09" }, { "version": "1.1.0", "date": "2026-03-30" }, { "version": "1.2.0", "date": "2026-07-31" } ], "_exports": [ "age_calculate", "age_from_chi", "as_percent", "chi_check", "chi_pad", "create_age_groups", "dob_from_chi", "extract_fin_year", "file_size", "format_postcode", "match_area", "NA_percent_", "qtr", "qtr_end", "qtr_next", "qtr_prev", "sex_from_chi" ], "_datasets": [ { "name": "area_lookup", "title": "Codes and names of Scottish geographical and administrative areas.", "object": "area_lookup", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "geo_code", "area_name" ], "rows": 17278, "table": true, "tojson": true } ], "_help": [ { "page": "age_calculate", "title": "Calculate age between two dates", "topics": [ "age_calculate" ] }, { "page": "age_from_chi", "title": "Extract age from the CHI number", "topics": [ "age_from_chi" ] }, { "page": "area_lookup", "title": "Codes and names of Scottish geographical and administrative areas.", "topics": [ "area_lookup" ] }, { "page": "percent", "title": "Percentages", "topics": [ "as_percent", "NA_percent_" ] }, { "page": "chi_check", "title": "Check the validity of a CHI number", "topics": [ "chi_check" ] }, { "page": "chi_pad", "title": "Add a leading zero to nine-digit CHI numbers", "topics": [ "chi_pad" ] }, { "page": "create_age_groups", "title": "Create age groups", "topics": [ "create_age_groups" ] }, { "page": "dob_from_chi", "title": "Extract Date of Birth (DoB) from the CHI number", "topics": [ "dob_from_chi" ] }, { "page": "extract_fin_year", "title": "Extract the formatted financial year from a date", "topics": [ "extract_fin_year" ] }, { "page": "format_postcode", "title": "Format a postcode", "topics": [ "format_postcode" ] }, { "page": "match_area", "title": "Translate geography codes into area names", "topics": [ "match_area" ] }, { "page": "qtr", "title": "Assign a date to a quarter", "topics": [ "qtr", "qtr_end", "qtr_next", "qtr_prev" ] }, { "page": "sex_from_chi", "title": "Extract sex from the CHI number", "topics": [ "sex_from_chi" ] } ], "_readme": "https://github.com/public-health-scotland/phsmethods/raw/HEAD/README.md", "_rundeps": [ "bit", "bit64", "cli", "clipr", "cpp11", "crayon", "dplyr", "farver", "generics", "glue", "hms", "labeling", "lifecycle", "lubridate", "magrittr", "pillar", "pkgconfig", "prettyunits", "progress", "R6", "RColorBrewer", "readr", "rlang", "scales", "stringi", "stringr", "tibble", "tidyselect", "timechange", "tzdb", "utf8", "vctrs", "viridisLite", "vroom", "withr" ], "_vignettes": [ { "source": "percent.Rmd", "filename": "percent.html", "title": "Using percent vectors", "author": "Nick Christofides", "engine": "knitr::rmarkdown", "headings": [ "Motivation", "Creating percentages", "Rounding", "Rounding via as_percent + digits", "Rounding via round()", "Math with percent vectors", "percent vectors and tidyverse", " vectors and formatted tables", "percent vectors and ggplot2" ], "created": "2026-02-05 12:03:38", "modified": "2026-02-05 12:03:38", "commits": 1 }, { "source": "chi-operations.Rmd", "filename": "chi-operations.html", "title": "Working with CHI numbers", "author": "James Hayes, Alan Yeung", "engine": "knitr::rmarkdown", "headings": [ "Checking and correcting CHI numbers", "Cleaning up bad CHI numbers", "Inferring data from a CHI number", "The structure of a CHI number", "Modulus-11 check", "Changes to CHI numbers (August 2026): Inclusion of Modulus-10 check", "Extracting sex from CHI", "Extracting Date of Birth from CHI", "Extracting age from CHI" ], "created": "2023-11-28 14:54:36", "modified": "2026-08-10 12:56:43", "commits": 4 } ], "_score": 9.160514149152444, "_indexed": true, "_nocasepkg": "phsmethods", "_universes": [ "public-health-scotland", "tina815" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.0.9000", "date": "2026-10-09T10:21:08.000Z", "distro": "resolute", "commit": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "fileid": "https://r2.ropensci.org/a222ab06b271385e0c3815f5ba3c701886e01cabb8f3db3e764662e4acd5c6a4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/public-health-scotland/actions/runs/37916461706" }, { "r": "4.6.1", "os": "linux", "version": "1.2.0.9000", "date": "2026-10-09T10:21:07.000Z", "distro": "resolute", "commit": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "fileid": "https://r2.ropensci.org/ddfd4dde823f67c309cbf463ea46a236dfbf46cb962d142572c3b5e25b27e75b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/public-health-scotland/actions/runs/37916461706" }, { "r": "4.5.3", "os": "mac", "version": "1.2.0.9000", "date": "2026-10-09T10:59:41.000Z", "commit": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "fileid": "https://r2.ropensci.org/1fba5028d6b7d71c25327291650d5f8ba8b826fb649837bb5a81a823114030a9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/public-health-scotland/actions/runs/37916461706" }, { "r": "4.6.1", "os": "mac", "version": "1.2.0.9000", "date": "2026-10-09T10:53:59.000Z", "commit": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "fileid": "https://r2.ropensci.org/1365b96c7cb42910d302e4ec45c2f2a0e2fac16692fb73532de01901887a2863", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/public-health-scotland/actions/runs/37916461706" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.0.9000", "date": "2026-10-09T10:21:05.000Z", "commit": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "fileid": "https://r2.ropensci.org/bad101a887f2c96e0dd139728fa664a05cb5cc5eb3efa8d82c98107916d56d64", "status": "success", "buildurl": "https://github.com/r-universe/public-health-scotland/actions/runs/37916461706" }, { "r": "4.7.0", "os": "win", "version": "1.2.0.9000", "date": "2026-10-09T10:20:18.000Z", "commit": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "fileid": "https://r2.ropensci.org/cad0c5ecc481262e893dc6f4bf03757e8c945f1c1348faaa06773674eae1c23c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/public-health-scotland/actions/runs/37916461706" }, { "r": "4.5.3", "os": "win", "version": "1.2.0.9000", "date": "2026-10-09T10:20:02.000Z", "commit": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "fileid": "https://r2.ropensci.org/8592b4016fdaf3f0e442332cc3b8d640c94eec01a761f3fb1017d69014d9e0e5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/public-health-scotland/actions/runs/37916461706" }, { "r": "4.6.1", "os": "win", "version": "1.2.0.9000", "date": "2026-10-09T10:20:04.000Z", "commit": "c1e6f658ef222aaea8a2f4c4bb0b2e416f5aed26", "fileid": "https://r2.ropensci.org/747fdd9ff2371faea7f7457463dab91f1e1f7a81c7089ab9e5c54e682b140e35", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/public-health-scotland/actions/runs/37916461706" } ] }